PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g029510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 234aa    MW: 25310.8 Da    PI: 7.2044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g029510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1517591055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +gr++AeIrdp +   + r++lg+f++aeeAa+a++aa+++l+g
  Csa15g029510.1 17 AXWGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 59
                    57**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.7551067IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-181669IPR016177DNA-binding domain
PfamPF008474.0E-91759IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-261867IPR001471AP2/ERF domain
SMARTSM003801.5E-261873IPR001471AP2/ERF domain
CDDcd000183.64E-121969No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAEAAASSSV AKPLHHAXWG RFAAEIRDPL KKSRVWLGTF DSAEEAARAY DAAARNLRGP  60
KAKTNFPIDC SPSSPLQPLN FHQNQNQNRN QNLCSVAANQ NQIDPFMDHR LYGGGNFQDQ  120
QMISRPASSS MSSTVKSCSG PRPMAEAAAS SSVAKPLHHA IKKRYPRTPP VAPEDCHSDC  180
DSSSSVIDDG DDIASSSSRR KPPFQFDLNF PPLDGVDLFA GATDDLHCTD LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1519762381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g029510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240361e-137AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12.
GenBankAB0322011e-137AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds.
GenBankAK2284601e-137AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12.
GenBankAY0372541e-137AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds.
GenBankAY0850231e-137AY085023.1 Arabidopsis thaliana clone 124720 mRNA, complete sequence.
GenBankAY0940011e-137AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds.
GenBankCP0026861e-137CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092430.11e-159PREDICTED: ethylene-responsive transcription factor 7-like isoform X3
SwissprotQ9LDE41e-100ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLD7LAY31e-108D7LAY3_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2255__AT3G20310.11e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-78ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]