PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g027830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26254.3 Da PI: 5.907 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.1 | 3.5e-11 | 21 | 60 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + k +r+v skRr++++ KA L+ L +a++av ++s+ Csa15g027830.1 21 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVASPA 60 56889********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-16 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.713 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.21E-22 | 11 | 81 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-14 | 12 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-10 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPAMTMKRRG TKRKIEIKKR DTKQQRSVAC SKRRQTLFSK AADLCLLSGA NIAVFVASPA 60 ENNDVVYSFS GYSPASEIAE SRVLVGRPDL YRNCDDISEL NVIEDRIMRT RKHLMDCLEK 120 KEKSQSVSNS DQNPSFSSLD ENPKSSSPSS CDKIASFEQN STFSSLEKIC GEPSSQATCY 180 YNQNHNFAIE DLYRDSSYGQ SGYLLKEDEY GFVESLWETG KQSDIMFQET FL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 13 | RRGTKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g027830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487931.2 | 1e-141 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019096884.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019096885.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019096886.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
TrEMBL | R0H9P9 | 6e-84 | R0H9P9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010487927.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 5e-79 | M-type_MADS family protein |