PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g027790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 408aa    MW: 46442.6 Da    PI: 6.2574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g027790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.9e-21857251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +++++s  ++++s+R+ +i+ KAe LSvLC+++v+vi+++++g l+++++
  Csa15g027790.1  8 SSSSYSLTSTSLSNRLLTIFRKAEQLSVLCEIDVCVIYYGPQGDLKTFPN 57
                    799*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0046658IPR002100Transcription factor, MADS-box
PfamPF003191.1E-101655IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-111787IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.4421759IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MRPSSSSSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCEID VCVIYYGPQG DLKTFPNEKE  60
KVRNMAMRYS RLDESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKNVDVLK YPISDHYSPD  120
QISQLIQSLE LNLSTSQQRL RFLLESHEKH KLLDHHHHQS LASSSSQNHQ TQSLNPSQKF  180
SLFMYNHGDN NLSQIPVSAS NLSQDFSALL EESHLKNQLM KQELSDCDQN ICMSDITNNS  240
FQHPCVLETE HTQGSFQHPC VSNTEAVQES VNNYGLNQLM QNQFYACDQN MSSIMGNSGL  300
MQHEFSTSLR LRNRTYSGVQ ESFGMNQLMQ KEFYGYDQNM SSMGIINSSS FQHPCVSNTE  360
AVQESVNNYG LNQLMQNQFY ACDQNMSSIM GNSGLMQHEV YGYDQNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KKRTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g027790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092249.10.0PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-109AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJI61e-118D7MJI6_ARALL; Predicted protein
STRINGXP_010481185.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-99AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]