PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g025250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 401aa    MW: 45102.4 Da    PI: 9.5837
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g025250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.68.9e-253683451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++s r ++++kRr++++KKA+ELSvLC+++v+vi+++++g+l+++++
  Csa15g025250.1 36 ASSSARATSLIKRRETVFKKANELSVLCGIDVCVIYYGPDGELKTWPK 83
                    68999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-111384IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-1736116IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.7133785IPR002100Transcription factor, MADS-box
PfamPF003199.2E-173781IPR002100Transcription factor, MADS-box
CDDcd002664.14E-1745105No hitNo description
PRINTSPR004049.1E-54762IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-56283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVSFSSCSPS TSSSTKKDSM RFPQTQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS  60
VLCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYCGLSE RKRRKGCVDL YEFIDKINKD  120
DSKKKQKKPK KEKPVRRVAK VKYPVWDPRF DNYSAEQLSG LVQSLERNLT RLQQRVRAVV  180
EGHGQRKIQY LNMASQGPMM PSTMNQYFQQ QPNQHVSMFL YNHGNGNVSQ IPVSASALNQ  240
GQSLAPVPSE LMIHPNQDVG NYSGSLGGQG TGINGFQNMN MLTYNNINSF NGFSKPIDQN  300
SRVGSYSSLL EDGIDEFEDS HNNFNAEDYS GFLGAQGTVT NGMQNMNMHD YNNNNYNSVN  360
ANGHSHQFGQ FQTQQQHGTF NWDQPGSNFR SLYDLPQPLQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102126RRKGCVDLYEFIDKINKDDSKKKQK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g025250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468267.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-163AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8551e-175R0I855_9BRAS; Uncharacterized protein
STRINGXP_010468267.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-140AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]