PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g023050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 329aa MW: 38313.6 Da PI: 10.4679 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.3e-17 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++ + +p +f+++++ kk s +++++ ++g+sW+v + +k+ + y+++ +GW +Fv++n L ++f++F ++g++ f +v Csa15g023050.1 19 FFKIFQSADLSSEYMRAFPYNFMSKIS-KKDFSYKMVIRAQWGKSWNVVV--SKNTRYYYIEkRGWDQFVSDNSLGRNEFITFIHKGKMIF--NV 108 89***99999999999*******9996.457999****************..888888555549********************9998888..66 PP EEE CS B3 95 kvf 97 ++ Csa15g023050.1 109 YIY 111 665 PP | |||||||
2 | B3 | 36.4 | 9.2e-12 | 236 | 313 | 12 | 95 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ l +pk+f+++h ++sk+ t+++++g+sW+v + + r+++++G ++ +++ + +gD + Fkl++ +fe+v+ Csa15g023050.1 236 YLKFLAIPKQFVDDHLP--QKSKMFTIRHPNGKSWKVLC--LVREVRTIFSGGYSKLAREFPISVGDKCNFKLID--TFEFVLD 313 446699********963..47889***************..8888899************************997..5555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-18 | 14 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-17 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.9E-16 | 19 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.06E-15 | 19 | 111 | No hit | No description |
SMART | SM01019 | 3.5E-19 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.858 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-18 | 224 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.588 | 225 | 318 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-16 | 226 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.08E-12 | 226 | 314 | No hit | No description |
SMART | SM01019 | 7.8E-13 | 228 | 318 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-10 | 235 | 313 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGWNTGFDLI KQERKNLGFF KIFQSADLSS EYMRAFPYNF MSKISKKDFS YKMVIRAQWG 60 KSWNVVVSKN TRYYYIEKRG WDQFVSDNSL GRNEFITFIH KGKMIFNVYI YEQNCMEILI 120 PRNLLSMDSS SGEGQRSYKD VKKENEEMDE SPGRVEIKIS KKKTEETKTS KKKMLNKKVK 180 NGTERGESSR GVELKAMKKK GEASISSKTK KKRKSKSNKK VIDGVPEFEI TIKKSYLKFL 240 AIPKQFVDDH LPQKSKMFTI RHPNGKSWKV LCLVREVRTI FSGGYSKLAR EFPISVGDKC 300 NFKLIDTFEF VLDIPKKTRE ETTHCMII* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 213 | KKKGEASISSKTKKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g023050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010465731.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 1e-130 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | R0I7T0 | 1e-169 | R0I7T0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010465731.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-127 | B3 family protein |
Publications ? help Back to Top | |||
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