PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g021790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 235aa    MW: 25647.9 Da    PI: 9.3415
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g021790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.7e-1886120135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Csa15g021790.1  86 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 120
                     *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.9E-1279120No hitNo description
SMARTSM004012.1E-1180135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.20280116IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-1484120IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.08E-1185135No hitNo description
PROSITE patternPS00344086111IPR000679Zinc finger, GATA-type
PfamPF003204.7E-1686120IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
HTIIKYLSVC FISCLSHPLA VSLSLLLTYH QNDHFLIFLK MSERSEETKT KLDSAGELSD  60
VDNENCSSSG SGGGGSSSSG DTKRTCVDCG TIRTPLWRGG PAGPKSLCNA CGIKSRKKRQ  120
AAAGVRSEEK KKIRKSNQIS SNDLNLEDRN VKKNNKDEDD EDDHKTCNHS KSTTTSSSSN  180
NNNNKGVSKF LDLGFKVPVM KRSAIEKKRL WRKLGEEERA AVLLMALSCS SVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g021790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291782e-92AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07.
GenBankBT0108442e-92BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465713.11e-138PREDICTED: GATA transcription factor 17
SwissprotQ9LIB52e-85GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A384L5446e-83A0A384L544_ARATH; GATA17
TrEMBLQ0WPA16e-83Q0WPA1_ARATH; Uncharacterized protein At3g16870
STRINGXP_010465713.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.11e-80GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]