PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g021790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 25647.9 Da PI: 9.3415 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.9 | 2.7e-18 | 86 | 120 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++ Csa15g021790.1 86 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 120 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.9E-12 | 79 | 120 | No hit | No description |
SMART | SM00401 | 2.1E-11 | 80 | 135 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.202 | 80 | 116 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 84 | 120 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.08E-11 | 85 | 135 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 86 | 111 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-16 | 86 | 120 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
HTIIKYLSVC FISCLSHPLA VSLSLLLTYH QNDHFLIFLK MSERSEETKT KLDSAGELSD 60 VDNENCSSSG SGGGGSSSSG DTKRTCVDCG TIRTPLWRGG PAGPKSLCNA CGIKSRKKRQ 120 AAAGVRSEEK KKIRKSNQIS SNDLNLEDRN VKKNNKDEDD EDDHKTCNHS KSTTTSSSSN 180 NNNNKGVSKF LDLGFKVPVM KRSAIEKKRL WRKLGEEERA AVLLMALSCS SVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g021790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229178 | 2e-92 | AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07. | |||
GenBank | BT010844 | 2e-92 | BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010465713.1 | 1e-138 | PREDICTED: GATA transcription factor 17 | ||||
Swissprot | Q9LIB5 | 2e-85 | GAT17_ARATH; GATA transcription factor 17 | ||||
TrEMBL | A0A384L544 | 6e-83 | A0A384L544_ARATH; GATA17 | ||||
TrEMBL | Q0WPA1 | 6e-83 | Q0WPA1_ARATH; Uncharacterized protein At3g16870 | ||||
STRING | XP_010465713.1 | 1e-137 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12643 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 1e-80 | GATA transcription factor 17 |
Publications ? help Back to Top | |||
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