PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g018030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 515aa MW: 57131.2 Da PI: 8.5615

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g018030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa15g018030.1 102 FVCEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.18E-6	101	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	101	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.2E-5	102	124	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	102	124	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	102	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	144	174	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.18E-6	174	199	No hit	No description
SMART	SM00355	180	179	199	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MMNKDMLLHQ HHHQPQQQVQ HQQDENMSNL TSASGGDQAS VSSGNITEAS GSNYFPHHQQ 60 QQFCVPDSSQ PQKKRRNQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRSNKEVIR KKVYVCPEAT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK 180 CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCEAL AEETAREVVL 240 PTQNQNNQPN PLLIRQSSSH PHPHHHQTQP NINVSSSSSS SHNIINSLHF ETNNGTSNGN 300 SSSNHLHTFP MKKEQQSNDH IINYHHNIPP WLAPHPHSHQ PHDLTSSNPN PSNGGGRGLF 360 TLASPAMSAT ALLQKAAQMG STKTPTTDLE RSNHNNNLTT TMASMMTSPS VFINSNNNNQ 420 SLFQDYNASG FDHHGGEEAF EDTFGGFLRT NEATTIAPAA RSEKSKSGGG EGLTRDFLGL 480 RPLMSHNEIL SFAGLGNCIN SSASDQLHPK PWQG*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MMNKDMLLHQ HHHQPQQQVQ HQQDENMSNL TSASGGDQAS VSSGNITEAS GSNYFPHHQQ  60
QQFCVPDSSQ PQKKRRNQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRSNKEVIR KKVYVCPEAT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCEAL AEETAREVVL  240
PTQNQNNQPN PLLIRQSSSH PHPHHHQTQP NINVSSSSSS SHNIINSLHF ETNNGTSNGN  300
SSSNHLHTFP MKKEQQSNDH IINYHHNIPP WLAPHPHSHQ PHDLTSSNPN PSNGGGRGLF  360
TLASPAMSAT ALLQKAAQMG STKTPTTDLE RSNHNNNLTT TMASMMTSPS VFINSNNNNQ  420
SLFQDYNASG FDHHGGEEAF EDTFGGFLRT NEATTIAPAA RSEKSKSGGG EGLTRDFLGL  480
RPLMSHNEIL SFAGLGNCIN SSASDQLHPK PWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	175	244	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-32	175	244	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	141	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g018030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630504	0.0	AJ630504.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g13810.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465251.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_010465253.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRING	XP_010465251.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]