PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g016850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 299aa    MW: 34439.4 Da    PI: 8.189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g016850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.12.3e-42241482128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL kkv  kk  +++e+++++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t     +atg dk+v+s 
  Csa15g016850.1  24 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSRNTEKENYFFCKRGRKYRNSIRPNRVTG----SATGIDKPVYSD 113
                     59*******************887764788888***************.5567789*********************99....89*********9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Csa15g016850.1 114 gpNKTVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 148
                     888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-4321183IPR003441NAC domain
PROSITE profilePS5100542.06623183IPR003441NAC domain
PfamPF023656.1E-2125148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEKMMGLRDN IRESKEDEEE VVKLPGFRFH PTDEELVGYY LSKKVLLKKP SKIDEIVSQI  60
DIYKFDPWDL PRSRNTEKEN YFFCKRGRKY RNSIRPNRVT GSATGIDKPV YSDGPNKTVI  120
GLKKTLVYYL GSAGKGSKTD WMMHEFRLPT ANDTIPGGPT HSNPTPTSAL QAEVWTLCRI  180
FKRNVSSRKY TSDWRELANG KRVKPQQSNY QEAYINFGDN ESSSSTNVIK GSYERSAFQL  240
HQTHHQHQHQ DQPIPMDTAT QVDSLQQFSN DNIDYESYEN WDELRSVVEF AFPPSSFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-39101832168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g016850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266453e-86AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026863e-86CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465071.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-68NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLR0HIW50.0R0HIW5_9BRAS; Uncharacterized protein
STRINGXP_010465071.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-162NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]