PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g016340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 275aa MW: 30165.2 Da PI: 4.5675

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g016340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.5	5e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + Csa15g016340.1 1 MQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 69 899*************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.1E-17	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	5.45E-18	1	71	IPR009072	Histone-fold
Pfam	PF00808	3.2E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSK SLELFLQDLC DRTYEITLER GAKTVSSLHL KHCVERYNVF 60 DFLREVVSKV PDYGHSQGQG HGDVTMDDRS ISKRRKPISD EVNDSDEEYK KSKTQEMGNA 120 KPSGRGGRGR GRGRGRGGRA ARAAEREGLN RDMELETAIV GQPPPEDSIK MHLSESSPQE 180 NEKKDVDGSA ASNEDTKQHL QSPKEGIDFD LNSESLDLNE TRLAPATGTT SSVATAPEEY 240 SGWPMMDIGK LDPAQLASLG KRIDEDEEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-14	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	136	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g016340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF462841	0.0	AF462841.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds.
GenBank	AY143847	0.0	AY143847.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465016.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	R0HSY7	1e-164	R0HSY7_9BRAS; Uncharacterized protein
STRING	XP_010465016.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-148	nuclear factor Y, subunit C11