PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g015650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 402aa    MW: 46127.3 Da    PI: 6.5806
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g015650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.15.4e-091050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    rien+  r  t+ k  + + KK +EL +L d+++++ii  +
  Csa15g015650.1 10 RIENNQTRALTLKKKITALQKKVKELTILSDVRACLIISNP 50
                    9************************************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.073147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-16392IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-5323IPR002100Transcription factor, MADS-box
CDDcd002669.84E-22381No hitNo description
PfamPF003196.2E-81051IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPRKKVKLAR IENNQTRALT LKKKITALQK KVKELTILSD VRACLIISNP NEVKPVVWPS  60
LETTHGLLDR FFALPKFVRD KYAMTVESYI EEETRKIQAQ LTKVHNEKRR YEIDEMMNQL  120
QERHITIADL SLSERYAMLS FSREKIISYR RHLHEQFPPL PDLPAFPVEV QVEPLNTTIN  180
DVFVGHNQDD ERATRRISIN ALVENGSHYL FDQWVSPLNP PILEMDPNPR SYRPYQGSSS  240
KGNHHLEMDP VYPQMMNSYG LLGSVSQPSQ HHNMNVNPMM VNYPPRQYPF DIMSYDVGVN  300
EEGNNMSSSQ FYMSNNTSLP TNDGLRQEPQ MMAFDGLHGS VSQPSQYHNP MMVMNPPRND  360
NTIATNDGLR QELPPNGPNG TITGEDNVDA TLFNINNWLM F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g015650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464888.10.0PREDICTED: uncharacterized protein LOC104745375
TrEMBLA0A178VQF21e-108A0A178VQF2_ARATH; AGL48
TrEMBLQ9XEF11e-108Q9XEF1_ARATH; AGAMOUS-like 48
STRINGXP_010464888.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-109AGAMOUS-like 48