PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g015410.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 270aa MW: 30188.3 Da PI: 7.5458

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g015410.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.9	3.5e-32	34	144	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+ Csa15g015410.1 34 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggggddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQ 128 99*************************9999988775556799************************************************ PP E-SS.SEE..EEEEE-S CS B3 84 ldgr.sefelvvkvfrk 99 ++ r + +l+++++r+ Csa15g015410.1 129 RH-RfDVHRLFIGWRRR 144 65.55999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-40	24	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-31	32	146	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-28	33	135	No hit	No description
Pfam	PF02362	2.5E-29	34	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.31	34	145	IPR003340	B3 DNA binding domain
SMART	SM01019	9.5E-25	34	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MSVNHSYHNT LSLQQQQHMH HQNDVAVAQR ESLFEKSLTP SDVGKLNRLV IPKQHAEKYF 60 PLNNNGGGGD DVATTEKGML LSFEDESGKC WKFRYSYWNS SQSYVLTKGW SRYVKDKHLD 120 AGDVVFFQRH RFDVHRLFIG WRRRGEASSS PAVSVVSQEA LVNTTAYWSG LTTPYRQVHA 180 STTYPNIHHE YSHYGAVADQ AQSTSTAVAG SSRTVRLFGV NLECHGDAVE PPARTDGYNG 240 QHIYYYSTPH AMNLSFAGEA LEQVGDGRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-50	27	144	1	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-50	27	144	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g015410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441076	0.0	AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBank	AK175281	0.0	AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464875.1	0.0	PREDICTED: B3 domain-containing protein At3g11580-like
Swissprot	Q8RYD3	1e-170	Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBL	D7LAP4	1e-173	D7LAP4_ARALL; Uncharacterized protein
STRING	XP_010464875.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	1e-167	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]