PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g015180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 543aa MW: 60095.2 Da PI: 6.0328 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 7.1e-16 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ + R++k+c++rw ++l Csa15g015180.1 42 KGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHL 89 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l+v+++++lG++ W+ a++++ gRt++++k++w++ Csa15g015180.1 95 KGAFSEDEEQLIVELHAKLGNK-WAQMAEHLP-GRTDNEIKNYWNT 138 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF001693 | 6.6E-278 | 1 | 542 | IPR016310 | Transcription factor, GAMYB |
PROSITE profile | PS51294 | 14.684 | 37 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-29 | 40 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-14 | 42 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-23 | 43 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.38E-10 | 44 | 89 | No hit | No description |
PROSITE profile | PS51294 | 26.205 | 90 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 95 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.24E-12 | 97 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 97 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MSYLTTVESD DGMHSSIYNE SSAADSISNG YRSRGRGGAL KKGPWTSTED GILIDYVKKH 60 GEGNWNAVQK HTSLARCGKS CRLRWANHLR PNLKKGAFSE DEEQLIVELH AKLGNKWAQM 120 AEHLPGRTDN EIKNYWNTRI KRRQRAGLPL YPPEIHVEDL QWSEEDTKSN IIRVDRRRRQ 180 DFLQFGNSKA NLLFDNLSFA ASLLPAASDI SDLVACNMLG TGASSSWYES YMPPILPSPK 240 QVWESGSRFP MCSSNIKHEV QSPEYFQNTA SQKNPRSCSI SPCYVDHPPY GNQHSSDMMM 300 ILDSHTLTDG MLPTSKPSFG AVKLELPSFQ YSETSAFDQW KTTPSPPHSD LLDSVDAYIQ 360 SPPPSQIEES DCFSSCDTGL LDMLLHEAKI KTSAKHSLLS SSPEKSFCST TCTTDATQNI 420 PRSQIKSGEL EDSQKNLARS EISIPTQLTA GNFVKTEELD QVWEPKRVDM TRPDVLLASS 480 WLDQGCYGIV RDTSSMSDAL ALLLGGDDIG NSYVTVGSSS GQAPRGGVRS CGWTNMPPVW 540 SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 40 | 143 | 5 | 107 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g015180.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519585 | 0.0 | AY519585.1 Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds. | |||
GenBank | BT003940 | 0.0 | BT003940.1 Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds. | |||
GenBank | BT005120 | 0.0 | BT005120.1 Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010464847.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Swissprot | Q9FR97 | 0.0 | MYB65_ARATH; Transcription factor MYB65 | ||||
TrEMBL | R0G454 | 0.0 | R0G454_9BRAS; Transcription factor | ||||
STRING | XP_010464847.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 0.0 | myb domain protein 65 |