PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g014840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 229aa    MW: 25724.5 Da    PI: 10.1762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g014840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  lv ++k +G g+W   a++ g+ R++ +c++rw++yl
   Csa15g014840.1 14 KGEWTAEEDRTLVAYIKVHGLGNWGILAKKAGLPRCGRSCRLRWLNYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding46.96.4e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T++E+  +++++++ G++ W+ Ia+ ++ +Rt+ ++k++w++
   Csa15g014840.1  67 RSKFTAQEENEIIKYHALIGNR-WAVIAKQLP-NRTDHDIKNHWNS 110
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.032961IPR017930Myb domain
SuperFamilySSF466897.4E-2911108IPR009057Homeodomain-like
SMARTSM007177.3E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-221568IPR009057Homeodomain-like
CDDcd001671.14E-91661No hitNo description
PROSITE profilePS5129423.23762116IPR017930Myb domain
SMARTSM007177.8E-1466114IPR001005SANT/Myb domain
PfamPF002497.1E-1467110IPR001005SANT/Myb domain
CDDcd001671.94E-869112No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2369116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRMTWFDAN GMKKGEWTAE EDRTLVAYIK VHGLGNWGIL AKKAGLPRCG RSCRLRWLNY  60
LRPGIKRSKF TAQEENEIIK YHALIGNRWA VIAKQLPNRT DHDIKNHWNS SLKKRLAKER  120
IDPVTHEPTI LTVEATSSST TSPSSIPSTT SSSSSFSSTG SVRLLNKLAA GIASRKYKLD  180
KIKMVIFSEQ PREANDKEKM LITMEDEDLI ALFWELPCHD STATTTGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g014840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464813.11e-170PREDICTED: transcription factor MYB35-like
SwissprotQ9M0J52e-55MYB41_ARATH; Transcription factor MYB41
TrEMBLR0I0D01e-115R0I0D0_9BRAS; Uncharacterized protein
STRINGXP_010464813.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.14e-99myb domain protein 95
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]