PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g011480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 474aa MW: 54365.4 Da PI: 7.6

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g011480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.4	5.3e-30	90	176	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Csa15g011480.1 90 RWPRQETLMLLEVRSRLDNKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 176 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.6E-4	87	150	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	89	148	IPR017877	Myb-like domain
Pfam	PF13837	5.4E-20	90	177	No hit	No description
CDD	cd12203	5.92E-20	90	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MEDHHHQNHP QYGIAQPSPL HFSSDLFGFN LVSAPDQHHR LHMTDHEISF LPRGIQGLTV 60 AGNNSNTIVA STSSTRGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDNKF KESNQKGPLW 120 DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE 180 SKDSVSCFDN TQFIMTNALH SFHAPNVHHN AVPHHQTPLS NTQSLSISNN LNSSSELDLT 240 SSSEGNESTR VKGMNWKEKI KEYIGIHIER LIEKQDFWLE KLMKTVEDKE HQRMVREEEW 300 KRVEAARIEK ERLFWKKERE RMEARDVAVI EALQYLTGKA SIRPNSSSPT ERIIGNVSDQ 360 TMADEENKSK MEKKEMNKKR KETWSSHGGT HSRIKESMMI YDNQETRIND CSRDDEQGHH 420 EGYSPSNSKE GNPSCGIAMP ASTTNCFPLL VGDGDQNSWE GYGLKLRKED NHQ*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MEDHHHQNHP QYGIAQPSPL HFSSDLFGFN LVSAPDQHHR LHMTDHEISF LPRGIQGLTV  60
AGNNSNTIVA STSSTRGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDNKF KESNQKGPLW  120
DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE  180
SKDSVSCFDN TQFIMTNALH SFHAPNVHHN AVPHHQTPLS NTQSLSISNN LNSSSELDLT  240
SSSEGNESTR VKGMNWKEKI KEYIGIHIER LIEKQDFWLE KLMKTVEDKE HQRMVREEEW  300
KRVEAARIEK ERLFWKKERE RMEARDVAVI EALQYLTGKA SIRPNSSSPT ERIIGNVSDQ  360
TMADEENKSK MEKKEMNKKR KETWSSHGGT HSRIKESMMI YDNQETRIND CSRDDEQGHH  420
EGYSPSNSKE GNPSCGIAMP ASTTNCFPLL VGDGDQNSWE GYGLKLRKED NHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g011480.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630487	0.0	AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464660.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-135	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	R0I3S2	0.0	R0I3S2_9BRAS; Uncharacterized protein
STRING	XP_010464660.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]