PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g009400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 375aa    MW: 41143.4 Da    PI: 5.8494
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g009400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  Csa15g009400.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box24.27.1e-084696440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..............Htvv 40
                     +C++++ ++++  C + ++ lC++C  ++H++              H+++
  Csa15g009400.1 46 LICERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnssssassspqqHKRQ 96
                    68*****************************87667777777777777665 PP
3CCT60.46.2e-21317360144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Csa15g009400.1 317 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 360
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000215.77E-8447No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7744398IPR000315B-box-type zinc finger
CDDcd000211.10E-54776No hitNo description
SMARTSM003362.24898IPR000315B-box-type zinc finger
PfamPF062031.0E-15317359IPR010402CCT domain
PROSITE profilePS5101715.338317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NSSSSASSSP QQHKRQTISC YSGCPSSSEL ASIWSFCLDL  120
AGQSICEQEM GMMNIDDNNN APTDKNCNED NKKDVLVESS TVPETSSPAQ GNSSFAKKDV  180
GVCEDDFYGN LGMDEVDLAL ENYEELFGVA FNPSEELFGH GGIDSLFQKH QTATEGGNHV  240
QPADSNDSFM SSKTEPIICF ASKPAHSNIS FSGVTGESSA GDFQECGASS SMQLSGEPPW  300
YPPTSQDNNA CSHSVTRNNA VMRYKEKKKA RKFDKRVRYA SRKARADVRR RVKGRFVKAG  360
EAYDYDPLTP TRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g009400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464401.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLR0HZV40.0R0HZV4_9BRAS; Uncharacterized protein
STRINGXP_010464401.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9