PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g009090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 481aa MW: 53094.7 Da PI: 7.6446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g009090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	3.9e-06	297	338	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa15g009090.1 297 KVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 338 78****************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.4E-13	275	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.268	287	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-5	293	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-13	297	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.10E-7	297	342	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MENELFMNAG VSQPPVMMTS PSSSSAMLNW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS 60 IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGAPASN GNVSSASCYA 120 TPMSCSPPPP RHMMVTKPPT PLAEFSGDTG FAERAARFSC FGSRSFNGRT NPPFPINNNN 180 VPVVANEKMP RVSSTPALKP LAGESSGEIS RKRKTKSKQN SPSTASPSKE VEEKEDSNPK 240 RSKKTEANED KTKSVDDDPY KDYIHVRARR GQATDSHSLA ERVSYLFCLF FTKINLKVRR 300 EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNTRLDFNMD 360 AFMSKDIFPS SNNLMHQQVL QLDSSAETLL SDHHHNTNLQ LNPKISSNNY IMTPLEPSET 420 RSFVSHLPTL AHFTDSISQY STFSEDDLHS IIHMGFAQNR IHELNQGPSN QVPSNMKAEL 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MENELFMNAG VSQPPVMMTS PSSSSAMLNW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS  60
IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGAPASN GNVSSASCYA  120
TPMSCSPPPP RHMMVTKPPT PLAEFSGDTG FAERAARFSC FGSRSFNGRT NPPFPINNNN  180
VPVVANEKMP RVSSTPALKP LAGESSGEIS RKRKTKSKQN SPSTASPSKE VEEKEDSNPK  240
RSKKTEANED KTKSVDDDPY KDYIHVRARR GQATDSHSLA ERVSYLFCLF FTKINLKVRR  300
EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNTRLDFNMD  360
AFMSKDIFPS SNNLMHQQVL QLDSSAETLL SDHHHNTNLQ LNPKISSNNY IMTPLEPSET  420
RSFVSHLPTL AHFTDSISQY STFSEDDLHS IIHMGFAQNR IHELNQGPSN QVPSNMKAEL  480
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	214	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g009090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464354.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	R0G587	0.0	R0G587_9BRAS; Uncharacterized protein
STRING	XP_010464354.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]