PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g008400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 144aa    MW: 15432.7 Da    PI: 10.0598
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g008400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-164276135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt k plWR+gp g+k+LCnaCG+++rkk++
  Csa15g008400.1 42 CAICGTNKPPLWRSGPAGPKSLCNACGIRNRKKRR 76
                    999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-123593No hitNo description
Gene3DG3DSA:3.30.50.101.9E-133689IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.5693672IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-123687IPR000679Zinc finger, GATA-type
CDDcd002021.11E-134192No hitNo description
PfamPF003201.7E-144276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MLDPTVKVFE SEAMGDSIEE HSSSNSNGGG GIISSSNEKK SCAICGTNKP PLWRSGPAGP  60
KSLCNACGIR NRKKRRTVIS NRSEDKIKKM KNPKLGDSLK QRLLELGREV MMQRSTTAGN  120
KLGEDEQAAV LLMALSYASS VYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g008400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639265e-83AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
GenBankAY0845255e-83AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence.
GenBankAY0912505e-83AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464261.11e-101PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG101e-68GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1J3ELK94e-67A0A1J3ELK9_NOCCA; GATA transcription factor 15
STRINGXP_010464261.11e-101(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-64GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]