PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g008290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20338 Da    PI: 6.7875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g008290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.3e-191157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++++  +qvtfskRr g++KKA+EL +LC+ae+ +++fs+ +k y +
  Csa15g008290.1 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEIGIVVFSPGNKPYSF 57
                    6788899*********************************9998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.94E-25171IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.754161IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-221257IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRRKIKMEQ VQDTNTKQVT FSKRRLGLFK KASELATLCN AEIGIVVFSP GNKPYSFGKP  60
NFDLIAERFK SEFEESDSFE TSGYNSRGSR ARQDKKICKC LNSINEEAEA EKKHGEDLHM  120
WLESAEEDRF SKPIEEFTLE DLKEFEARMK RVQGGIQINL NNMHASSSLL VLSTDVSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15175174MEF2 CHIMERA
6byy_B1e-15175174MEF2 CHIMERA
6byy_C1e-15175174MEF2 CHIMERA
6byy_D1e-15175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g008290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464249.11e-130PREDICTED: agamous-like MADS-box protein AGL29
SwissprotO647031e-60AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLR0HZP11e-105R0HZP1_9BRAS; Uncharacterized protein
STRINGXP_010464249.11e-129(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.12e-78AGAMOUS-like 91
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]