PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g008280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20957.8 Da PI: 7.9355

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g008280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.4	4.5e-19	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+ae+ +++fs+ +k y + Csa15g008280.1 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEIGIVVFSPGNKPYSF 57 6788899*********************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.754	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.01E-24	1	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-22	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGRRKIKMEQ VQDTNTKQVT FSKRRLGLFK KASELATLCN AEIGIVVFSP GNKPYSFGKP 60 NFDLIAERFK SEFEESDSFE TSSYTSRGSR ARQDKKICKR LNSINEEAEA EKKHGEDLHM 120 WLESAEEDRF NKPIEEFTLE ELKEFEAKMK RVQGGIQINR DNMQASSSLL VLCNDVSMQL 180 CK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-15	1	83	1	82	MEF2C
5f28_B	1e-15	1	83	1	82	MEF2C
5f28_C	1e-15	1	83	1	82	MEF2C
5f28_D	1e-15	1	83	1	82	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g008280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC036106	1e-143	AC036106.6 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence.
GenBank	CP002686	1e-143	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	DQ056634	1e-143	DQ056634.1 Arabidopsis thaliana MADS-box family protein (At3g66656) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010468047.1	1e-133	PREDICTED: agamous-like MADS-box protein AGL29
Swissprot	O64703	2e-60	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	R0HZP1	1e-110	R0HZP1_9BRAS; Uncharacterized protein
STRING	XP_010468047.1	1e-132	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G66656.1	6e-84	AGAMOUS-like 91

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]