PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g007300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 283aa MW: 32329.2 Da PI: 6.9146 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ien+ r tf kR++g lKK +ELSvLC++e++ +++s+++ Csa15g007300.1 10 YIENDPMRRATFNKRKKGFLKKIHELSVLCGIEACAVVYSPSNS 53 59**************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-24 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.054 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.70E-32 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.4E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-16 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MTRKRLNLSY IENDPMRRAT FNKRKKGFLK KIHELSVLCG IEACAVVYSP SNSTPEAWPS 60 NVGVKNVVEK FQMLTDMEQE KKMVNHEGFL KQNISKAMGN NKRKMKDNAE RMMKEAMFEL 120 LGGKEDRFKL TNRHREDLCK YIDQYLKELH HHKNKILRQS HVGYGESSEA ATNVMAPTSS 180 GEVNSQFFPT LNVSNSPSQI PEEVNAFPGN NFSAAADQQD YYPVMNPAVG FYDHNANVNH 240 LGHNQYQQED VYRPSVHQDG IDNPSQNQNQ QEEWLVSDDD LS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g007300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019092504.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6BIQ2 | 1e-119 | S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment) | ||||
STRING | XP_010486064.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 1e-103 | M-type_MADS family protein |