PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g007070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 293aa    MW: 31852.7 Da    PI: 10.1172
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g007070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.72.2e-29137196258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ++YVN+KQy++I++RRq+Rak+++   +kkl+++srkpy+h+SRh hAlrRpRgsgGrF
  Csa15g007070.1 137 GTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSTRSRKPYMHHSRHLHALRRPRGSGGRF 196
                     689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.7E-30134199IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.158135199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-21138160IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-24138196IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-21173196IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAMQTVREGL FSAPQTSWWN AFGSQAPLAH ESLAGDSDSF VGVKVGSAGE TEQSGDKQNN  60
SVTHLAFSLG DVKSSRVVSK SHGAVFTMQS PSLELGFTHP SIYAKYPYGE QQYYGVVSAY  120
GSQSRLMLPL NMETEDGTIY VNSKQYHGII RRRQSRAKAA AVLDQKKLST RSRKPYMHHS  180
RHLHALRRPR GSGGRFLNTK SQTLEKSGTN AKKADGNKQV QPQQSNSQNS EVVHPESGIM  240
NLSNGLNVTG SEVTSMNYFL SSPVHSLGGM VMPSKWIAAA AMDNNSCCNF KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-15136197260HAPB protein
4g92_A1e-15136197260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g007070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464112.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
RefseqXP_019092132.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2
SwissprotQ9M9X40.0NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLR0HMJ60.0R0HMJ6_9BRAS; Uncharacterized protein
STRINGXP_010464112.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-177nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]