PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g006890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25225.9 Da PI: 6.3593 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 7e-12 | 112 | 206 | 2 | 81 |
EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDf 79 +k+lt+sdv+++ rl lpk+ a+eh + +++ ++t+ d ++ + +++++ + + g+yvl ++W k+Fv+ ++Lk+g + Csa15g006890.1 112 KKTLTNSDVGSQTRLLLPKEPANEHilkylteeeiklvedE--GHQGLKITVFDsTEKTTHQLRFKRWTSAGSYVLNNNWnKDFVQRKDLKAGKT 204 699**********************8876666666555321..224444544442444677777777*************557**********98 PP EE CS B3 80 vv 81 + Csa15g006890.1 205 IG 206 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-15 | 107 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.96E-17 | 109 | 222 | No hit | No description |
Pfam | PF03754 | 1.1E-8 | 111 | 191 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 111 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MLLFPSHGEG LASTVPCGIR SEGLVMNTQD DTPLSSPTTT RLLDLFPCES VVVLDLFPCK 60 GGEFACRVPP SVTRNETGVS LAYFRNMPGV ERDIMDATEL TLSIEADIWK IKKTLTNSDV 120 GSQTRLLLPK EPANEHILKY LTEEEIKLVE DEGHQGLKIT VFDSTEKTTH QLRFKRWTSA 180 GSYVLNNNWN KDFVQRKDLK AGKTIGLFWN PYASRLHLRV LDML |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g006890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010468027.1 | 1e-167 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | R0I8N3 | 8e-91 | R0I8N3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010468027.1 | 1e-166 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 3e-26 | B3 family protein |