PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g004970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21902.2 Da    PI: 9.3568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g004970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.91.9e-161463150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+++n+  r + fskR+ gi+KK +EL  +Cd+eva+++fs+ gk y+++
  Csa15g004970.1 14 KKVDNYGDRMIAFSKRKGGIFKKLNELVSMCDVEVAMLVFSQAGKPYTFA 63
                    578999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-19665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.736666IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-22684IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-16828IPR002100Transcription factor, MADS-box
PfamPF003193.4E-181662IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRKTKGKQK IEMKKVDNYG DRMIAFSKRK GGIFKKLNEL VSMCDVEVAM LVFSQAGKPY  60
TFAFPSMNEV AARLKNPSGQ ELFAKGHTGP LVEAYKKQRI HDGIVKMEAL EEELALDLEE  120
LKEVKKSRKE KKLDKKWWNI PEDGLSMKEM QRRHQALVDL HDNLCEFFYP PMGKDGGSSS  180
SGSLGCDHSG GSASD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g004970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463884.11e-143PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLD7L2162e-89D7L216_ARALL; MADS-box family protein
STRINGXP_010463884.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-67AGAMOUS-like 57