PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g003590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 278aa    MW: 29491.8 Da    PI: 7.6688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g003590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.6e-40561571101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+k+l+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael
  Csa15g003590.1  56 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKFLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 150
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     ++++++l
  Csa15g003590.1 151 SVVQSQL 157
                     ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.16955157IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3956154IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADQQRPHNT SDSRRKSLAG RRTSSQQTPT TSSLSSGGGS INAAATTTTG TGTASPCGAC  60
KFLRRKCVSG CIFAPHFGSD QGAARFAAVH KVFGASNVSK FLHHIPVNRR HDAVVTISYE  120
AQARLSDPVY GCVSTILALQ QQVASLQAEL SVVQSQLINS RVAMANVMQQ QTHHQQQQQL  180
VVMQQPEYSN NSSASTTLAG AAMNSFTVAA EAAAVSYDVM APTNLEHSLP PMPLNQQSRG  240
DQHHEDEEES GADFLVAVGS TAVASEVIFP AEGFHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-40441581112LOB family transfactor Ramosa2.1
5ly0_B8e-40441581112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g003590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463835.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-154LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-155D7L194_ARALL; LOB domain protein 20
STRINGXP_010463835.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-128LOB domain-containing protein 20