PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g003020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 702aa MW: 78896 Da PI: 5.7113 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 25 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q++ Le++F ++++p++++r++L ++l+L +qVk+WFqN+R++ k Csa15g003020.1 25 RTGHRHTPQQIQGLEAFFMECPHPDEAQRQQLCEELKLRLDQVKFWFQNKRTQCK 79 555789*********************************************9988 PP | |||||||
2 | START | 118.7 | 8.1e-38 | 214 | 434 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 a +a +el ++ +ee++Wvkss +sen+++ +++ + ++e +++++vv+ ++++l e +ld +W+e ++ ka+tl Csa15g003020.1 214 AASAVEELKRLFFSEEQFWVKSSidgtdliDSENYEKFSNAVKK--FrstsAHVESSKDVTVVPIEATNLIEMFLDAE-KWKELFPtmvnKAKTL 305 5678889999999*************888888888887555533..233667************************99.99998888888***** PP EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 v+ s ++l +m +l lsplvp R+f++vR++++ ++g w+i+dvS +++ + ++s + ++pSg+li++++n skv w+eh Csa15g003020.1 306 YVLGSElpirencNILRVMWEQLHILSPLVPpREFMIVRCWQEISKGLWIIADVSHNVDFDFF-NAS---CYKRPSGCLIQSLPNAQSKVMWIEH 396 *****************************************************9977776666.344...5569********************* PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 v++ +l h ++r l++ g gak+w atl+r ce+ Csa15g003020.1 397 VEVAHKLDaHKIYRELLSGGSGYGAKRWIATLERMCER 434 *******99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-17 | 9 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 11 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.37 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-17 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-16 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 4.9E-16 | 26 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 40.114 | 203 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.32E-26 | 205 | 435 | No hit | No description |
CDD | cd08875 | 5.51E-83 | 208 | 433 | No hit | No description |
SMART | SM00234 | 3.2E-20 | 212 | 434 | IPR002913 | START domain |
Pfam | PF01852 | 2.9E-31 | 214 | 434 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-6 | 215 | 393 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.67E-8 | 455 | 666 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MENDGSGSSC NEQYASEDSN QSGKRTGHRH TPQQIQGLEA FFMECPHPDE AQRQQLCEEL 60 KLRLDQVKFW FQNKRTQCKA QEERAENLSL HRENEILKSE NEAIFGALSS VLCPDCGGPP 120 FGREKRAVNF QKLLLENVRL KEQRDKISHF LSNMSKRPTV GDSFASVPTQ HISSYGINPS 180 NMFDPFSSFG PPTSQPIQPQ PISQMDVSLL SETAASAVEE LKRLFFSEEQ FWVKSSIDGT 240 DLIDSENYEK FSNAVKKFRS TSAHVESSKD VTVVPIEATN LIEMFLDAEK WKELFPTMVN 300 KAKTLYVLGS ELPIRENCNI LRVMWEQLHI LSPLVPPREF MIVRCWQEIS KGLWIIADVS 360 HNVDFDFFNA SCYKRPSGCL IQSLPNAQSK VMWIEHVEVA HKLDAHKIYR ELLSGGSGYG 420 AKRWIATLER MCERMALTSY LTLPASDWSE VIRTGEERRR VLKLGERMIM NFNEMLTMSG 480 KVDFPQQSKC GVRVSMRMNL EAGQPPGLIV SAASSLRIPL PPVQVFDILR KLDTRQQWDV 540 LAYGTVVTEI ARIATGSSET NCLSILRVHP TQEENNNGKM IAQESDKDDM LMLQDCYMDA 600 LGGMLVYAPM DMATMDTTLS GADVKISDIP ILPSGFIISS DGRRSTVEDG GTLLTLAFQI 660 LVSGRTSRSR EVNERSVDTV SALISSTVQR IKGLLNCPDQ F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g003020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010463776.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG8-like | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A178VGS8 | 0.0 | A0A178VGS8_ARATH; HDG8 | ||||
STRING | XP_010463776.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |