PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g002200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 267aa    MW: 28415.1 Da    PI: 7.3827
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g002200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.87.9e-294106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q 
  Csa15g002200.1   4 SCNGCRVLRKGCSEDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQD 98 
                     6*********************************************************************************************9 PP

          DUF260  91 kaelallk 98 
                     ++e ++ +
  Csa15g002200.1  99 AVEGVMKG 106
                     99876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.3E-1021266IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089115.9263109IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EGVMKGEPIT EIATDAATIG  120
QGPPLKSYDI RHNSKDDNSA AAAATGSTDL KQGKTRRAKR VAALEKQSES DGKSGGGEAS  180
HESSLSHQSE VVAGHEGESK ESESNASEVL AFSPPAVQGS GEIKLDLTLG LEPVSREYDV  240
VPVKKRRIGV FGTCQKESTC KTELVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g002200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463667.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-175LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0I6Q70.0R0I6Q7_9BRAS; Uncharacterized protein
STRINGXP_010463667.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-174LOB domain-containing protein 41