PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g002000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 347aa    MW: 38456.6 Da    PI: 5.4181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g002000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-061456440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+++ +   + +Ce ++ +lC++C    H        H++v
  Csa15g002000.1 14 RSCDTCRSAACTVYCEADSAYLCNTCDARVHAAnrvasrHERV 56
                    68******99******************999556677778766 PP
2zf-B_box32.32e-1056101342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      r+C+ +e+ ++ + C+ +   lC  C  e+H+       H++vp+
  Csa15g002000.1  56 VRVCQSCESAPAAFLCKADAASLCTACDAEIHSAnplarrHQRVPI 101
                     689*****************************66899999**9997 PP
3CCT68.51.8e-23277319143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+
  Csa15g002000.1 277 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 319
                     9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-91158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6231158IPR000315B-box-type zinc finger
CDDcd000216.28E-81458No hitNo description
PROSITE profilePS5011911.66154101IPR000315B-box-type zinc finger
PfamPF006435.1E-856101IPR000315B-box-type zinc finger
CDDcd000211.01E-857101No hitNo description
SMARTSM003365.0E-1159101IPR000315B-box-type zinc finger
PROSITE profilePS5101716.44277319IPR010402CCT domain
PfamPF062033.2E-17277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLKEENNESG NWARSCDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRVA SRHERVRVCQ  60
SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP ILPLSANSCS SMAPSETDAD  120
NDEDDIEVAS WLLPNPGKNS GTQNNGFLFG VEYLDLVDYS SSMDNQFDDH QYSQYQRSFG  180
GDGVVPLQVE ESTSHLQQSQ HNFHLGINYD CSSGAHYNNS LKDLNYSASV SSMDISVVPD  240
STASDITVQH PRTTKETIDQ LSGPPTQMVQ QLTPMEREAR VLRYREKKKT RKFDKTIRYA  300
SRKAYAEIRP RIKGRFAKRI EIEADAEEIF STSLMSETGY GIVPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g002000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHCOL2A0.0L81120.1 Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds.
GenBankAY0887790.0AY088779.1 Arabidopsis thaliana clone 949 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463643.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965020.0COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLI3RT180.0I3RT18_ARALL; Putative flowering-time constans protein
STRINGXP_010463643.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.10.0CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]