PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g069120.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 305aa MW: 35177.4 Da PI: 5.8641

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g069120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	2e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v Csa14g069120.1 6 LPPGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVE 99 79**************************.99**********95334455788********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl Csa14g069120.1 100 S-KKIKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-63	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	6	153	IPR003441	NAC domain
Pfam	PF02365	3.9E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEPMSLPPGF RFHPTDEELV AYYLDRKVNG RAIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES KKIKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTNAPSSS LKESYALCRV FKKNIQIPKR KGEEQDAEEE STSIGKHEEE 180 EKEIKKWRKF DGNIEDESLK RASAETSSSE LTQGVLVDEA NSSSIFALHF SSSLLDDHDT 240 LFSNYTHQHQ LPYHPPLQLQ DFPQLSMNEA DIMSTVQQDF QCRDSMNGTL DEIFFSSATF 300 PASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	4	154	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	4	154	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	4	154	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	4	154	15	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	4	154	15	166	NAC domain-containing protein 19
4dul_B	1e-54	4	154	15	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g069120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	0.0	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462486.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-80	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A178WA62	0.0	A0A178WA62_ARATH; NAC020
TrEMBL	Q67Z40	0.0	Q67Z40_ARATH; NAC domain containing protein 20
STRING	XP_010462486.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-177	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]