PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa14g067460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 136aa MW: 16020.2 Da PI: 8.998 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 169.6 | 2.5e-52 | 1 | 135 | 241 | 374 |
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 ++e+ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++++GF +vp++++a + Csa14g067460.1 1 MAEREANHGDHSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEARERKQRHRRFEIWEEMMKRFGFVNVPIGSFALS 95 68********************************************************************************************* PP GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 qaklllr ++ s+gy+++ ++sl+lgW++r L+svS+W+ Csa14g067460.1 96 QAKLLLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSWK 135 ***************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.3E-50 | 1 | 135 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 21.113 | 1 | 114 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MAEREANHGD HSFLNRFSEA VDHYVAIFDS LEATLPPNSR ERLTLEQRWF GKEIFDVVAA 60 EARERKQRHR RFEIWEEMMK RFGFVNVPIG SFALSQAKLL LRLHYPSEGY NLQFLNNSLF 120 LGWQNRLLFS VSSWK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-22 | 1 | 134 | 248 | 378 | Protein SCARECROW |
5b3h_A | 2e-22 | 1 | 134 | 247 | 377 | Protein SCARECROW |
5b3h_D | 2e-22 | 1 | 134 | 247 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa14g067460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC002328 | 0.0 | AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence. | |||
GenBank | AC005223 | 0.0 | AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence. | |||
GenBank | AY196482 | 0.0 | AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds. | |||
GenBank | BT026519 | 0.0 | BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480099.1 | 4e-94 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-90 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | D7KMZ6 | 6e-89 | D7KMZ6_ARALL; Uncharacterized protein | ||||
STRING | XP_010480099.1 | 1e-93 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11329 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55580.1 | 6e-93 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|