PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g063540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22540 Da PI: 10.0043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++ a+++++g Csa14g063540.1 37 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDSAAREFRG 86 59*******.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.00E-31 | 37 | 94 | No hit | No description |
PROSITE profile | PS51032 | 24.026 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-32 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-35 | 37 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 37 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 37 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTTNVGSKPD PVVVSNPTRE SGNNHNNNNN NAAKEIRYRG VRKRPWGRYA AEIRDPVKKT 60 RVWLGTFDTA QQAARAYDSA AREFRGSKAK TNFPTFLELH GNAVGGGGGN NSPSCQSSTV 120 VSSSSPPKAA RFVTSPPQLE LSLGGGDGAY RRIPVTRPVY YFNMTTAFPK VTACGFQSES 180 ETSSVVDFEG GTGKISQPLD LDLNLAPPAE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 33 | 94 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00202 | DAP | Transfer from AT1G53170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g063540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF499716 | 2e-65 | AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462184.1 | 1e-154 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Swissprot | Q9MAI5 | 2e-78 | ERF79_ARATH; Ethylene-responsive transcription factor 8 | ||||
TrEMBL | R0IN88 | 1e-101 | R0IN88_9BRAS; Uncharacterized protein | ||||
STRING | XP_010462184.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 3e-61 | ethylene response factor 8 |
Publications ? help Back to Top | |||
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