PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g060390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 91590.1 Da PI: 6.4178

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g060390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	16	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Csa14g060390.1 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP
2	START	168.2	5.7e-53	160	368	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l Csa14g060390.1 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 253 7899****************************************************.7777777777************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 + +l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l+ Csa14g060390.1 254 YVQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLY 348 ****************************************999999***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s + ++kt++a+l+++++ Csa14g060390.1 349 ESPKVLAQKTTMAALRQLKQ 368 **************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.2E-15	13	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	15	79	IPR009057	Homeodomain-like
CDD	cd00086	9.26E-17	16	76	No hit	No description
Pfam	PF00046	2.9E-16	17	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-18	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	19	75	IPR001356	Homeobox domain
CDD	cd14686	1.18E-6	68	107	No hit	No description
PROSITE profile	PS50848	25.559	150	378	IPR002913	START domain
CDD	cd08875	3.76E-73	154	370	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.4E-20	159	345	IPR023393	START-like domain
SMART	SM00234	3.2E-38	159	369	IPR002913	START domain
SuperFamily	SSF55961	7.83E-36	159	371	No hit	No description
Pfam	PF01852	1.4E-50	160	368	IPR002913	START domain
Pfam	PF08670	1.3E-51	692	834	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT 120 HNPSLPAKDT SCESVVTSGQ HQLAGQNPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN 240 VLPTANGGTI ELLYVQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP 300 LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM 360 AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM 420 DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW 480 ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV 540 PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR 600 TLDLASALEI GSAGTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII 660 SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRGYMGVELL KLNSEGNESV 720 LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVAL QDISLEKIFD DNGRKTLCSE 780 FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE TAHCICFVFI NWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT  120
HNPSLPAKDT SCESVVTSGQ HQLAGQNPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN  240
VLPTANGGTI ELLYVQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP  300
LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM  360
AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM  420
DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV  540
PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR  600
TLDLASALEI GSAGTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII  660
SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRGYMGVELL KLNSEGNESV  720
LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVAL QDISLEKIFD DNGRKTLCSE  780
FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE TAHCICFVFI NWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g060390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ439449	0.0	AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBank	AY060556	0.0	AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462051.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	R0IKW4	0.0	R0IKW4_9BRAS; Uncharacterized protein
STRING	XP_010462051.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]