PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g059960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 220aa MW: 24150.8 Da PI: 9.2088 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.7 | 3.4e-40 | 33 | 93 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn+k+s Csa14g059960.1 33 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNNKRS 93 57899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.9E-33 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.497 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-27 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MQDMTSAAAY YNQSMMMMAT AAAKQNQPEL QPEQEQLKCP RCDSPNTKFC YYNNYNLSQP 60 RHFCKNCRRY WTKGGALRNI PVGGGSRKNN KRSASSSSSS PSSSSGNLKN HQTVSAEKPT 120 HDHHHQSGSG SKPEVERVTT GQHMDPTRML YGLPVGDQNC TTTSGSFSSL LASNMQVGGL 180 VYESGSRWFP GMDLGLGPGL RRSNDDTWTD LAMNRVEKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g059960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017564 | 2e-65 | AB017564.1 Arabidopsis thaliana adof1 mRNA for dof zinc finger protein, complete cds. | |||
GenBank | AC025294 | 2e-65 | AC025294.14 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence. | |||
GenBank | AK229106 | 2e-65 | AK229106.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-C17. | |||
GenBank | BT025772 | 2e-65 | BT025772.1 Arabidopsis thaliana At1g51700 mRNA, complete cds. | |||
GenBank | CP002684 | 2e-65 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462007.1 | 1e-165 | PREDICTED: dof zinc finger protein DOF1.7-like | ||||
Swissprot | O82155 | 1e-107 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | R0IJ19 | 1e-110 | R0IJ19_9BRAS; Uncharacterized protein | ||||
STRING | XP_010462007.1 | 1e-165 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-96 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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