PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059850.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 288aa    MW: 31239.9 Da    PI: 8.9543
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059850.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.82e-15223258134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg
  Csa14g059850.2 223 CRHCGIGEksTPMMRRGPAGPRTLCNACGLMWANKG 258
                     ****865556***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51377112IPR010399Tify domain
SMARTSM009797.6E-1177112IPR010399Tify domain
PfamPF062002.8E-1179111IPR010399Tify domain
PROSITE profilePS5101712.987147189IPR010402CCT domain
PfamPF062031.9E-15147189IPR010402CCT domain
SMARTSM004019.2E-12217270IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.642217265IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-12218279No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15221264IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.61E-15222272No hitNo description
PfamPF003203.0E-13223258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEDLHGSNAR LHIGEAQDPM HVQYEHHALH HIHNGSGMVD NHADGGNAGG MSEGVEADIP  60
SHPGNITDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAPP  120
TSLGSAHQNN RALGLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ  180
RNKGQFTSAK SNNDEAASAG SSWGSNQTWA IEGSEAQNQE ISCRHCGIGE KSTPMMRRGP  240
AGPRTLCNAC GLMWANKGAL RDLSKGASPQ TPQNVPLNKN EISKTNF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461994.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP10.0R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010461994.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2