PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g059850.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 31239.9 Da PI: 8.9543 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.8 | 2e-15 | 223 | 258 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg + Tp++Rrgp g++tLCnaCGl+++ kg Csa14g059850.2 223 CRHCGIGEksTPMMRRGPAGPRTLCNACGLMWANKG 258 ****865556***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.513 | 77 | 112 | IPR010399 | Tify domain |
SMART | SM00979 | 7.6E-11 | 77 | 112 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.8E-11 | 79 | 111 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.987 | 147 | 189 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.9E-15 | 147 | 189 | IPR010402 | CCT domain |
SMART | SM00401 | 9.2E-12 | 217 | 270 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.642 | 217 | 265 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-12 | 218 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.2E-15 | 221 | 264 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.61E-15 | 222 | 272 | No hit | No description |
Pfam | PF00320 | 3.0E-13 | 223 | 258 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 223 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEDLHGSNAR LHIGEAQDPM HVQYEHHALH HIHNGSGMVD NHADGGNAGG MSEGVEADIP 60 SHPGNITDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAPP 120 TSLGSAHQNN RALGLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ 180 RNKGQFTSAK SNNDEAASAG SSWGSNQTWA IEGSEAQNQE ISCRHCGIGE KSTPMMRRGP 240 AGPRTLCNAC GLMWANKGAL RDLSKGASPQ TPQNVPLNKN EISKTNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g059850.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB119061 | 0.0 | AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds. | |||
GenBank | AY150395 | 0.0 | AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461994.1 | 0.0 | PREDICTED: GATA transcription factor 28 | ||||
Swissprot | Q8H1G0 | 0.0 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | R0IMP1 | 0.0 | R0IMP1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461994.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 0.0 | ZIM-LIKE 2 |