PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 366aa    MW: 40347.3 Da    PI: 9.7138
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-13316346129
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGly 29 
                     C++Cg  +  Tp++Rrgp g++tLCnaCGl+
  Csa14g059850.1 316 CRHCGIGEksTPMMRRGPAGPRTLCNACGLM 346
                     ****865556*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.513170205IPR010399Tify domain
SMARTSM009797.6E-11170205IPR010399Tify domain
PfamPF062003.8E-11172204IPR010399Tify domain
PROSITE profilePS5101712.987240282IPR010402CCT domain
PfamPF062032.7E-15240282IPR010402CCT domain
SMARTSM004014.0E-6310362IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-9311349No hitNo description
Gene3DG3DSA:3.30.50.101.0E-11314347IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.65E-10315346No hitNo description
PfamPF003202.8E-11316346IPR000679Zinc finger, GATA-type
PROSITE patternPS003440316343IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
NKSSLFSPLP FTVPSLSLSR SLRFCIRLAG VLVFGVPSPF WVVVHRFRAF QLIIFFTVSV  60
VCIWFLLESF DILHYSHLVL LPRFRSLLCL LATMEDLHGS NARLHIGEAQ DPMHVQYEHH  120
ALHHIHNGSG MVDNHADGGN AGGMSEGVEA DIPSHPGNIT DNRGEVVDRG SEQGDQLTLS  180
FQGQVYVFDS VLPEKVQAVL LLLGGRELPQ APPTSLGSAH QNNRALGLPG TPQRFSIPQR  240
LASLVRFREK RKGRNFDKKI RYTVRKEVAL RMQRNKGQFT SAKSNNDEAA SAGSSWGSNQ  300
TWAIEGSEAQ NQEISCRHCG IGEKSTPMMR RGPAGPRTLC NACGLMVPLG TYPKALLPKH  360
PKMFL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461994.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-175GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP11e-178R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010461994.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-178ZIM-LIKE 2