PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 358aa    MW: 40471.3 Da    PI: 6.1961
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-104996154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+
  Csa14g059470.1 49 TKYKGVVQQQ-NGNWGAQIYAD-----HRRIWLGTFKSAAEAAASYDSASIKLR 96
                    69****9888.8******9993.....4*********************99997 PP
2B390.71.1e-28182277184
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pkk+a ++            +g++ + +++ ++d+  r+W+++++y+k+s+++v+t+GW+ Fvk+++Lke+D++vF+
  Csa14g059470.1 182 FQKELTPSDVGKLNRLVIPKKHAVKYlpyisddhnekeEGETGGAVEIDFYDRAMRQWKFRYCYWKSSQSFVFTRGWNAFVKEKNLKEKDSIVFY 276
                     99******************************9998887777899*************************************************9 PP

                     E CS
              B3  84 l 84 
                      
  Csa14g059470.1 277 N 277
                     3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.76E-2249109No hitNo description
SMARTSM003801.7E-1450113IPR001471AP2/ERF domain
PROSITE profilePS5103216.9550107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1550107IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1350109IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.108.8E-32179277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-26181276IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-26181276No hitNo description
PROSITE profilePS5086311.265182293IPR003340B3 DNA binding domain
SMARTSM010194.0E-19182293IPR003340B3 DNA binding domain
PfamPF023624.1E-26182278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDMDEMSNED KTTTETSGSS DSVLPLMKRM KPTVVVETPP ALSNTVTTTK YKGVVQQQNG  60
NWGAQIYADH RRIWLGTFKS AAEAAASYDS ASIKLRSFDA NSHRNFPWSD FTAHEPDFQK  120
PFTTEAVLNM IKDGSYQLKF RDFLKLRSQM VARINIGGSK QAQGGGGADQ ESDKCFSSAE  180
LFQKELTPSD VGKLNRLVIP KKHAVKYLPY ISDDHNEKEE GETGGAVEID FYDRAMRQWK  240
FRYCYWKSSQ SFVFTRGWNA FVKEKNLKEK DSIVFYNCHV PSNAETLEGQ SNNFKMIDVH  300
YFSGNGFMVP EEVNKTAQES SDEEMKTGNV FSSKLEDEEP KPEEKKGGFM LFGVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2518127513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461945.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLR0IGJ80.0R0IGJ8_9BRAS; Uncharacterized protein
STRINGXP_010461945.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.10.0RAV family protein