PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g059400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25153.6 Da PI: 4.4835 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 93 | 131 | 4 | 49 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 ++ rE++RRd +f eL ++l + + +K +K++i A++ Csa14g059400.1 93 SKACREKQRRD----KFTELSSILEPG---RTPKTEKVAIINDAIR 131 56789999996....69*********8...89**********9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.34E-4 | 92 | 131 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVTDKSWLPE EDFKGLADNF FDNLVEHMDD FPLEDIETAD DDDEEDWDAG CYLDLEPGKF 60 KINVLVMVIS MFSSAARKFK GLETESCTAG SSSKACREKQ RRDKFTELSS ILEPGRTPKT 120 EKVAIINDAI RMERIEQQLK EIKTQPQPQP CFLPNPPTLS QAQAQAPGSK LVSFTTYPGF 180 AMWQSMPPAP VDTSQDHVLR LRLLKASSLS IIDCSGFFLR AFY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g059400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079828 | 4e-69 | AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence. | |||
GenBank | AF488632 | 4e-69 | AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY085619 | 4e-69 | AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence. | |||
GenBank | BT002433 | 4e-69 | BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds. | |||
GenBank | CP002684 | 4e-69 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500676.1 | 1e-61 | PREDICTED: transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 4e-58 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A178W1E6 | 1e-55 | A0A178W1E6_ARATH; BHLH115 | ||||
STRING | XP_010500676.1 | 5e-61 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 3e-46 | bHLH family protein |
Publications ? help Back to Top | |||
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