PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g059380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25510.9 Da PI: 6.9279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 70 | 116 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + + +K +K++i A++ +++ Csa14g059380.1 70 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTEKVAIINDAIRMVNH 116 5678**********************8...8**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.922 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-7 | 69 | 122 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 70 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-12 | 70 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-7 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVSPENTNWL SDYPLIDGAF SDHNPTFPWQ IDGSSSVSVE VDGFLCDSDV IKEPGSRKRI 60 KTESCTGSSS KACREKQRRD RLNDKFTELS SILEPGRTPK TEKVAIINDA IRMVNHARDE 120 AQKLKDLNSS LQEKIKELKD EKSELRDEKH KLKIEKERIE QQLKEIKTQP QPPPCFLPNP 180 PTLSQAQAPG SKLVPFTTYP GFAMWQFMPP AAVDTSQDHV LRPPVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g059380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488632 | 0.0 | AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY085619 | 0.0 | AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence. | |||
GenBank | BT002433 | 0.0 | BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds. | |||
GenBank | BT006273 | 0.0 | BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461939.1 | 1e-167 | PREDICTED: transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-157 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | R0GNJ4 | 1e-156 | R0GNJ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461939.1 | 1e-167 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-144 | bHLH family protein |
Publications ? help Back to Top | |||
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