PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g059010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 421aa MW: 48564.1 Da PI: 8.9339 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.7 | 3.3e-09 | 40 | 85 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +ykGV + +g W ++I+ +kr++lg+f +a eAa a++ a kl Csa14g059010.1 40 KYKGVVQLQ-NGHWGVQIYTD-----QKRIWLGTFKSAVEAAMAYDSASIKL 85 8****9988.8******8883.....5*******************998776 PP | |||||||
2 | B3 | 83.4 | 2e-26 | 164 | 257 | 2 | 85 |
EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +k+ltpsdv+k++rlv+pk++a ++ +g+ ee+++++ +d++ r+W+++++y+k+s+++v+t+GWk+Fv+ ++Lke+D++ F+ Csa14g059010.1 164 QKELTPSDVGKLNRLVIPKRYAVNYmpsirpkekeEGEIEEGVEIVCYDSELRQWKFRYCYWKSSQSFVITSGWKSFVRKKKLKEKDVISFYTC 257 799*******************999*****998886666799*************************************************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.9E-11 | 40 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-11 | 40 | 97 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-5 | 40 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.27E-17 | 40 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-13 | 40 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.488 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-29 | 157 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-25 | 160 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.24E-20 | 162 | 255 | No hit | No description |
SMART | SM01019 | 1.5E-17 | 163 | 278 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.758 | 163 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-24 | 164 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MTETETFLPP KKRMRLDDEP EKAQVVASAT KTVAVRGKVK YKGVVQLQNG HWGVQIYTDQ 60 KRIWLGTFKS AVEAAMAYDS ASIKLGRYDV NSYRNFPRSD VTTHEPEFQD RFTTESLLNM 120 IREGSYQQKF RDFLRSRSKI VGGSKQVVRG EESNKGFSRT ELYQKELTPS DVGKLNRLVI 180 PKRYAVNYMP SIRPKEKEEG EIEEGVEIVC YDSELRQWKF RYCYWKSSQS FVITSGWKSF 240 VRKKKLKEKD VISFYTCDVK TLEGQIKHSL MIDVHYSSHN GSVVPEEANM TVHDSSEEGM 300 KTEKFVSSKL KHEETKTEEN KGSFLLFGSK TRLELSFTHQ KSLSSFYICD VPDNVKTVEG 360 QDKNFWMIDV HYYSENGSVV PEEVNMKTER FVSSKLKDEE TKTEEKKISF MLFGVGIQCS 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-22 | 159 | 257 | 4 | 96 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-22 | 159 | 257 | 4 | 96 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g059010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010463344.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_010463358.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_019091357.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_019091358.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_019091359.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 1e-153 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | D7KGR6 | 1e-161 | D7KGR6_ARALL; Uncharacterized protein | ||||
STRING | XP_010463344.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010463358.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-147 | RAV family protein |