PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g058970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 218aa    MW: 24208.9 Da    PI: 8.494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g058970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-191362255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    g+ GVr ++ +gr++AeIrd ++    + r++lg+f++aeeAa+a++ a+++l+g
  Csa14g058970.1 13 GCGGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 62
                    577******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6141370IPR001471AP2/ERF domain
PRINTSPR003672.4E-81425IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-211471IPR016177DNA-binding domain
SMARTSM003804.2E-331676IPR001471AP2/ERF domain
CDDcd000187.11E-291672No hitNo description
PfamPF008475.4E-121662IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-291670IPR001471AP2/ERF domain
PRINTSPR003672.4E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMRKPSWSVL WGGCGGVRKR PWGRFAAEIR DPWKKSRVWL GTFDSAEEAA RAYDSAARNL  60
RGPKAKTNFP VDPSSPSPNL RFAAFPTTVN QNQNQNQVDP FMDHRLYPGD NNNNQQFHPV  120
VNRPTCSSMS STVESFSGPR PTAAKPVTTA AKRYPRTPPV VPEDCHSDCD SSSSVIDDDD  180
IASSSRRRSP PFKFDLNIPP LDEFNGSDDL HCTDLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1916771779Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g058970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081053e-70AB008105.1 Arabidopsis thaliana AtERF-3 mRNA for ethylene responsive element binding factor 3, complete cds.
GenBankAB4935043e-70AB493504.1 Arabidopsis thaliana At1g50640 mRNA for hypothetical protein, partial cds, clone: RAAt1g50640.
GenBankAC0125613e-70AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792793e-70AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankBT0252953e-70BT025295.1 Arabidopsis thaliana At1g50640 mRNA, complete cds.
GenBankCP0026843e-70CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461919.11e-147PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803395e-76ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLR0I4B47e-87R0I4B4_9BRAS; Uncharacterized protein
STRINGXP_010461919.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-51ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]