PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g058750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 483aa MW: 54053.7 Da PI: 6.3481 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 529 | 1.5e-161 | 54 | 479 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++++Pilk+s+ Csa14g058750.1 54 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALQATQTRTNNVSEEIHVRRLFFDMFPILKVSY 148 689******************************************************************************************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++ +ke l ++++rL + Ae+l++pf+fn+ v++rl++l+ Csa14g058750.1 149 LLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQFNP-VVSRLDCLN 238 ******************************************************....9**************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsles..erdevL 228 +e+Lrvk+gEalaV++vlqlh++l ++s++l+s ++d++L Csa14g058750.1 239 VEQLRVKTGEALAVSSVLQLHTFLasdddlmrkncavrfqnnpsgidlqrvlmmshgsaaeapenemsnnngyspsgdsASSLPLHSsgRTDSFL 333 *****************************************************************************99777777766799**** PP GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +++++lsPkv+vv+eq++dhn++ ++er+le+l++y+alfd+le+k+pr+s++rikvE++l+g+ei+n++aceg+errerhe+lekW++r++ aG Csa14g058750.1 334 NAMWGLSPKVMVVTEQDSDHNGSALMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAG 428 *********************************************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaWr Csa14g058750.1 429 FGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAWR 479 **************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.274 | 28 | 459 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-159 | 54 | 479 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MVAMLQEDNV TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT 60 CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE ALANRILKSW PGLYKALQAT 120 QTRTNNVSEE IHVRRLFFDM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA 180 LIQAFNSRPE GPPHLRITGV HHQKEVLDQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE 240 QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCAVRFQNN PSGIDLQRVL MMSHGSAAEA 300 PENEMSNNNG YSPSGDSASS LPLHSSGRTD SFLNAMWGLS PKVMVVTEQD SDHNGSALME 360 RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK NIIACEGSER RERHEKLEKW 420 SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC 480 RK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-40 | 37 | 481 | 1 | 380 | Protein SCARECROW |
5b3h_D | 5e-40 | 37 | 481 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g058750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012561 | 0.0 | AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence. | |||
GenBank | AY056154 | 0.0 | AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds. | |||
GenBank | AY091260 | 0.0 | AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461894.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_010461895.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | R0GWE7 | 0.0 | R0GWE7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461894.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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