PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g057590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 569aa    MW: 64668.5 Da    PI: 8.9865
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g057590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.9e-094085253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    +ykGV +   +g W ++I+       +kr++lg+f +a eAa a++ a  kl
  Csa14g057590.1 40 KYKGVVQLQ-NGHWGVQIYTD-----QKRIWLGTFKSAVEAAMAYDSASIKL 85
                    8****9988.8******8883.....5*******************998776 PP
2B380.41.9e-25186278284
                     EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f++ltpsdv+k++rlv+pk++a ++          +g+  e+++++ +d++ r+W+++++y+k+s+++v+t+GWk+Fv+ ++Lke+D++ F+ 
  Csa14g057590.1 186 FQELTPSDVGKLNRLVIPKRYAVNYmpsirpkekeEGEIVEGVEIVCYDSEFRQWKFRYCYWKSSQSFVITSGWKSFVRKKKLKEKDVISFYT 278
                     6889******************999***99977764444599*************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-134086IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-114090IPR016177DNA-binding domain
SMARTSM003805.8E-104095IPR001471AP2/ERF domain
CDDcd000188.61E-164096No hitNo description
PROSITE profilePS5103215.044097IPR001471AP2/ERF domain
SMARTSM010199.2E-18185300IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561185300IPR003340B3 DNA binding domain
SuperFamilySSF1019366.54E-24185282IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-20185277No hitNo description
Gene3DG3DSA:2.40.330.106.5E-27186279IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-22186280IPR003340B3 DNA binding domain
PfamPF015350.031430452IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MTETETFLPP KKRMRLDDEP EKAQVVASAT KKVAVRGKVK YKGVVQLQNG HWGVQIYTDQ  60
KRIWLGTFKS AVEAAMAYDS ASIKLGRFDV NSYRNFSRSD VRTHEPEFQD RFTTESLLNM  120
IREGSYQQKF RDFLRSRSKI VGGSKQVVRG EESNKGFSRT ELXVGGSKQV VRGEESNKGC  180
SRTELFQELT PSDVGKLNRL VIPKRYAVNY MPSIRPKEKE EGEIVEGVEI VCYDSEFRQW  240
KFRYCYWKSS QSFVITSGWK SFVRKKKLKE KDVISFYTCD VKTLEGQIKH SLMIDVHYSS  300
HNGSVVPEEA NMTVHDSSEE GMKTEKFVIS KLKDEETKTE ENKGSFLLFG SLSSFLYLDG  360
LADVAVDLAY LRSLTEIKAQ TTHGYARGAV DLFQTMLRSH VSPNEVTFIA VLSACAHGGL  420
VEDGQRLFAC MVDLFGRNGL LKEAKALIEK MPMEPTNVVW GALFGSCLIH KDYELGKYAA  480
YRAIKLQPSH SGRYTLSANL YSESQNWDEV ALVRKQMKDQ QVVKTPGCSW MEVKGKLHDS  540
IAFDDKKRLE SDDLYKTLDN VRVQIEFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-20180279296B3 domain-containing transcription factor NGA1
5os9_B4e-20180279296B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g057590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0079801e-136AC007980.1 Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete sequence.
GenBankAK2292561e-136AK229256.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-C21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463344.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-145RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-152D7KGR6_ARALL; Uncharacterized protein
STRINGXP_010463344.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-134RAV family protein