PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g055320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 331aa    MW: 38581 Da    PI: 6.1391
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g055320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.6e-091147237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                    ++r C+++ +k++ ++C +++ +lC+ C ++ H+  H
  Csa14g055320.1 11 QPRACDLCLNKHAVWYCASDDAFLCHVCDESVHSAnH 47
                    7899*****************************6574 PP
2CCT66.19.9e-23282325144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++ RY++K+k+R+Fe+kirYe+RK++A++RpR+KGrFv+++
  Csa14g055320.1 282 REARVWRYRDKKKNRLFENKIRYEVRKVNADKRPRMKGRFVRRS 325
                     9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-111057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0961057IPR000315B-box-type zinc finger
PfamPF006431.1E-71153IPR000315B-box-type zinc finger
CDDcd000217.33E-111357No hitNo description
PROSITE profilePS5101715.388282324IPR010402CCT domain
PfamPF062032.2E-17282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MIPKYQEDVK QPRACDLCLN KHAVWYCASD DAFLCHVCDE SVHSANHVAT KHERVWLRTN  60
EIQNNVLQGT TSHPVWHSGF RRKARTLRSR CEKKTQQKID DERRREDPRV PEIGGEAMFF  120
IPEANDDEND TTSLVPEFEE LTVTEMGFFL SNHNGTQETT KQFNFEDEID AMEDLYYNEE  180
EKAAKTNGAE ACPGQSLMSC KKAYDNVIAI SAKTEETEDY EDNARQGNML LRLNYENVIA  240
AWDKQESPRE AARNQTELFN TSNFQLVPPG IEEKRVTSRS EREARVWRYR DKKKNRLFEN  300
KIRYEVRKVN ADKRPRMKGR FVRRSLDPES *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g055320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091541.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X2
RefseqXP_019091542.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X2
SwissprotQ9M9B30.0COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLR0I7D90.0R0I7D9_9BRAS; Uncharacterized protein
STRINGXP_010500455.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-177B-box type zinc finger protein with CCT domain