PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g051920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 272aa    MW: 31719.6 Da    PI: 9.0695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g051920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-1663110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT eEd +l+ ++ ++G g W+  ++  g++Rt+k+c++rw++yl
   Csa14g051920.1  63 RGPWTVEEDMKLISYISLHGEGKWNFLSHSAGLNRTGKSCRLRWLNYL 110
                      89********************************************97 PP
2Myb_DNA-binding44.73.1e-14118159346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + +E+ ++++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa14g051920.1 118 DISFQEQFIILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 159
                      55778999************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.13858114IPR017930Myb domain
SuperFamilySSF466895.99E-3061157IPR009057Homeodomain-like
SMARTSM007171.3E-1462112IPR001005SANT/Myb domain
PfamPF002499.6E-1663110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2064117IPR009057Homeodomain-like
CDDcd001673.28E-1065110No hitNo description
PROSITE profilePS5129415.418115165IPR017930Myb domain
SMARTSM007175.6E-13115163IPR001005SANT/Myb domain
PfamPF002495.0E-13117159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21118163IPR009057Homeodomain-like
CDDcd001673.74E-9120159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MPLQRTLTLN NHQNIYQIIL SSQVSKNYQS MNICRTESSN CETLKRKEEV KKFEKKIEIE  60
TRRGPWTVEE DMKLISYISL HGEGKWNFLS HSAGLNRTGK SCRLRWLNYL RPDIRRGDIS  120
FQEQFIILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR VQKHAKLLKC DVNSKQFKDI  180
IKHYWMPRLV ERIASTQNVE SVPNQYSPEN SSATTAATSY TSSESVRSSF YGGDQMESGT  240
KLDSNGGDWF NDGDALETLW SFDELNNWLL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-245216316126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g051920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461601.10.0PREDICTED: myb-related protein 340
SwissprotQ10MB45e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLD7KC021e-124D7KC02_ARALL; Uncharacterized protein
TrEMBLR0I7Z81e-124R0I7Z8_9BRAS; Uncharacterized protein
STRINGXP_010461601.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-121myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]