PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g048840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 286aa MW: 32746.9 Da PI: 6.6026 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.6 | 9.1e-20 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ien+s r+ tf kR++g KK +ELSvLC++e++v+i+s+++ + e Csa14g048840.1 10 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACVVIYSPSNSVPE 56 59****************************************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-25 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.147 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.89E-35 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 4.0E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTRKKLNLSY IENDSMRKAT FNKRKKGFVK KIHELSVLCG IEACVVIYSP SNSVPEVWPS 60 NLGVKNVVEK FEMLTDMEQE KKMVNHEGFL KQNISKAMGN NKRKMKDNAE RMMKEAMFEL 120 LGGKADRFKL TLTNIHREDL CKYIDQYLKE LYHHKNIILR QSHVEYDESS EAATNFMAPT 180 SSVEVNSQFF PTFNVSNSQC FQLSSNEVNT FPGNNLSTVV AQQDYYPVIN PVGVYDHNAN 240 VNHLGHNQYQ QQDGYPTIVP QYGIDNPSQN QGQQEEWLVS DDDLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g048840.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019092504.1 | 1e-173 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6BIQ2 | 1e-113 | S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment) | ||||
STRING | XP_010486064.1 | 1e-170 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 1e-103 | M-type_MADS family protein |