PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g046890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 94aa    MW: 10741.3 Da    PI: 9.6371
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g046890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
   Csa14g046890.1 14 KGAWTKEEDQLLIDYIRNHGEGSWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129422.216965IPR017930Myb domain
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-171461IPR001005SANT/Myb domain
SuperFamilySSF466895.03E-241590IPR009057Homeodomain-like
CDDcd001676.59E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.4E-106590IPR009057Homeodomain-like
PROSITE profilePS512948.3896693IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRSPCCEKA HSNKGAWTKE EDQLLIDYIR NHGEGSWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGKF TDSEDQIIVK LHSLFGNKYE FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-17139326105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g046890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2279944e-92AK227994.1 Arabidopsis thaliana mRNA for putative transcription factor, complete cds, clone: RAFL14-52-M09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090823.11e-60PREDICTED: transcription repressor MYB6-like
SwissprotQ388511e-56MYB6_ARATH; Transcription repressor MYB6
SwissprotQ9SDS89e-57MYB8_ARATH; Transcription factor MYB8
TrEMBLD7KLV41e-55D7KLV4_ARALL; Uncharacterized protein
STRINGXP_010478947.16e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.14e-59high response to osmotic stress 10
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]