PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa14g046800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19359.5 Da PI: 9.5776 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.5 | 7.3e-13 | 2 | 51 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien+ r vtf +R++ i K + LS LC+++v +++s++g y++ Csa14g046800.1 2 KKIENYADRMVTFYRRKQKIYTKLSKLSLLCGVDVGFLVYSNSGITYTFG 51 68**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-16 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-6 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.619 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-15 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MKKIENYADR MVTFYRRKQK IYTKLSKLSL LCGVDVGFLV YSNSGITYTF GSPSFKVVAK 60 RFLNCEGSSS TSLPQQPNID VQHQKKMEEL YKLYNNILQK ANAEKHKGMV MAKAEAEALP 120 VEKNPWWRVD PPTVKDKEVL KQLMEKYEDL YEKLCGEVVA KNQIENAP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa14g046800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019091102.1 | 1e-115 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LMQ2 | 2e-58 | D7LMQ2_ARALL; Uncharacterized protein | ||||
STRING | XP_010418992.1 | 2e-97 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29962.1 | 6e-49 | AGAMOUS-like 64 |