PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g044280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 575aa MW: 65281.4 Da PI: 7.9993 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 8e-23 | 126 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g l++p + a+e+ +++ + +++ +d++g++W++k+++r++++r+++t+GW+ Fv ++L +gD++vF r++ Csa14g044280.1 126 FKKILTASDTSTHGGLSVPIRDATEClppldmSLPMP-TQEFLTKDLHGNEWRFKHSFRGTPRRHLITTGWSAFVTTKKLVAGDVLVFV---REN 216 89****************************9744444.458999*********************************************...799 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ Csa14g044280.1 217 GELRVGIRRA 226 99*****996 PP | |||||||
2 | Auxin_resp | 101.6 | 1e-33 | 251 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+++k++F+vvY+Pr+ s+Fvv+++++++a+++k+ vG+Rf m+fe+ed+serr+sGt++gv++++p +W++S+WrsL+ Csa14g044280.1 251 AVHAFHSKCMFTVVYKPRS--SQFVVRYDNFLDAMNKKFNVGSRFTMQFEGEDFSERRYSGTIIGVNNFSP-HWKDSEWRSLQ 330 799***************6..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-36 | 114 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-29 | 120 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-22 | 125 | 225 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-20 | 126 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.5E-30 | 251 | 330 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-5 | 471 | 513 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.756 | 477 | 558 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.9E-12 | 479 | 553 | No hit | No description |
Pfam | PF02309 | 6.5E-6 | 520 | 564 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MESGHIVNAQ PELSGIVDET KSYIYEQLWN LCAGPLCDLP KLGDKVYYFP QGHIEFVEAS 60 TREELNQIQP NFDIPSKLKC HVIAIHRKVE KNTDQVYAEI TLMPDTTQVI IPTQNDSNDR 120 PKINFFKKIL TASDTSTHGG LSVPIRDATE CLPPLDMSLP MPTQEFLTKD LHGNEWRFKH 180 SFRGTPRRHL ITTGWSAFVT TKKLVAGDVL VFVRENGELR VGIRRAGHQQ GNIPSSLVST 240 ESMRLGVIVS AVHAFHSKCM FTVVYKPRSS QFVVRYDNFL DAMNKKFNVG SRFTMQFEGE 300 DFSERRYSGT IIGVNNFSPH WKDSEWRSLQ VRWDEFVSFP RPNRVSPWEI KHLTPSSNVI 360 QSSLLKNKRS RHANEIGSSS SHRLPPILIE GQKIGQPSMN CPMSIPQLSN RDAIEGGSCR 420 LFGVTLITPS EIKDPVEPND SYQISDTSKL SEERKLGLTP TSKSPTEIQS KQFSSIRSCT 480 KVQMQGATIG RALDLSVLNG YDQLIHELDK LFDLKGKLQT RNQWEIVFTD DEGDMMVVGD 540 DPWPEFCNMV KKIFILSKEE VNNLKWNQRF KMNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-124 | 27 | 353 | 22 | 355 | Auxin response factor 1 |
4ldw_A | 1e-124 | 27 | 353 | 22 | 355 | Auxin response factor 1 |
4ldw_B | 1e-124 | 27 | 353 | 22 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g044280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019091439.1 | 0.0 | PREDICTED: putative auxin response factor 14 isoform X1 | ||||
Swissprot | Q9LQE8 | 0.0 | ARFN_ARATH; Putative auxin response factor 14 | ||||
TrEMBL | A0A178WK87 | 0.0 | A0A178WK87_ARATH; Auxin response factor | ||||
TrEMBL | D7L9F7 | 0.0 | D7L9F7_ARALL; Auxin response factor | ||||
STRING | XP_010463133.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35540.1 | 0.0 | auxin response factor 14 |