PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g044030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 1398aa    MW: 157977 Da    PI: 4.7651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g044030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.91.8e-48131392128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i  vd+ykv+P++Lp  +++k+++++w+fF++r++ky++  r++r t +gyWkatgkd+ +  
  Csa14g044030.1  13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPSELPglSMLKTGDRQWFFFTPRNRKYPNAARSSRGTVTGYWKATGKDRVIEY 106
                     59***************************.89***************644888999*************************************99 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfy+grap+ge+tdWvmhey++
  Csa14g044030.1 107 -NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                     .999****************************87 PP
2NAM155.81.8e-486818072128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv++yLk+k+ +k+l++ +vi  vd+yk++P++Lp + ++k+++++w++F++r++ky++  r++r t++gyWkatgkd+ +  
  Csa14g044030.1 681 APGFRFHPTDEELVMYYLKRKICRKRLRV-NVIGVVDVYKMDPQELPgQsMLKTGDRQWFYFTPRSRKYPNAARSSRGTETGYWKATGKDRVIEY 774
                     59***************************.99**************96347888999************************************99 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfy+grap+ge+tdWvmhey++
  Csa14g044030.1 775 -NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 807
                     .999****************************87 PP
3NAM91.41.5e-28946102350128
             NAM   50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 
                      + +++  +w++F++r++ky++  r++r t++gyWkatgkd+ +   +++ vglkktLvfy+grap+ge+tdWvmhey++
  Csa14g044030.1  946 SSTEKAAQWFYFTPRSRKYPNAARSSRGTETGYWKATGKDRVIEY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 1023
                      3334556************************************99.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.65312162IPR003441NAC domain
SuperFamilySSF1019417.72E-5413162IPR003441NAC domain
PfamPF023652.1E-2514138IPR003441NAC domain
PROSITE profilePS5100552.905680830IPR003441NAC domain
SuperFamilySSF1019414.84E-55681830IPR003441NAC domain
PfamPF023651.3E-24682806IPR003441NAC domain
PROSITE profilePS5100533.9648931046IPR003441NAC domain
PfamPF023658.7E-139301022IPR003441NAC domain
SuperFamilySSF1019414.18E-339481046IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1398 aa     Download sequence    Send to blast
MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL  60
SMLKTGDRQW FFFTPRNRKY PNAARSSRGT VTGYWKATGK DRVIEYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EYELGRCKNA KEYYAVYKLY KKSGAGPKNG EQYGAPFQEE  180
EWVDSDSEEG DNVAVPDDPA VVHYENCRPM DDPVVHYENC RRMDDSVVHY DNSRRMDDPV  240
VHYENSRRMD DTKFCNPVNV RLQDIEKLLN EIPDAPGVTT RQFNGFTGVP QGNSAGEIQS  300
TLLNSSSGEF VDPRNTGVFL PNSQPYNRQS SFQSGLKSKN SFEATSGMSP LLDFEKEDYI  360
EMNDLLIPEL GASSTEISTH FLNNGEVSDI SEFDQLFHDI SMSLDADPVF QGTSTDLSSL  420
SNFANNTSDQ RQQFIYQQLD QTLENQQNNF MHPSTTLNQF TDSMWFKDGQ AVLFDQQPQS  480
SSGVFTSHST GVKPESMNPT VSVNAQNKEG QNGGGTKSQF SSALWELLES IPSTPASACE  540
GPLNQTFVRM SSFSRIRFNG TSVTSKKVTV AKKRISNRGF LLLSIMGALC AIFWVFIATI  600
ANQINSNLIS PSLPFLFSSL LFSLADQTLG FSNRSIAEGC SHCHVGLILL LFWILSDEEK  660
KRSEMAESSP DSCFKGGKFS APGFRFHPTD EELVMYYLKR KICRKRLRVN VIGVVDVYKM  720
DPQELPGQSM LKTGDRQWFY FTPRSRKYPN AARSSRGTET GYWKATGKDR VIEYNSRSVG  780
LKKTLVFYRG RAPNGERTDW VMHEYTMDED ELGRCKYPQD YYALYKLFKK SGAGPKNGEQ  840
YGAPFQEEEW VDDDNEDENT VAVPDQPVVR YEDERRLFNP VHSEEELQST LVNDSARDFV  900
PNSQPYNRPS SFDSLETTEA TSVPLVFEKE DFIEMDDLLI PELGASSTEK AAQWFYFTPR  960
SRKYPNAARS SRGTETGYWK ATGKDRVIEY NSRSVGLKKT LVFYRGRAPN GERTDWVMHE  1020
YTMDEDELGR CKYPQDYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDENTVAVP  1080
DQPVVRYEDE RRLFNPVHSE EELQSTLVND SARDFVPNSQ PYNRPSSFDS LETTEATSVP  1140
LVFEKEDFIE MDDLLIPELG ASSTEKAAQV SNHGEFGDFN DFDQLFHDVS MSLDMELIDQ  1200
GTSTNLTSVS SFANDTSNQR QQFLYQQLED QTPENQLNNI MDPSTTLNQF TDEIWFQDDQ  1260
AVLFDEQQAF SGSFAPPSSG VMPDSTNPTM SVHAQDQERQ NGGGTTSQFS SALWALMDSI  1320
PSTPASACEG PLNRTFVRMS SFSRIRFKAN GTPVTSTIAK KGIRNRGFLL LSIVGALCAI  1380
FWVFIATVRV SGRTVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4314102317140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g044030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618130.0AF361813.1 Arabidopsis thaliana F23M19.13/F23M19.13 mRNA, complete cds.
GenBankAY1335520.0AY133552.1 Arabidopsis thaliana At1g34190/F23M19.13 mRNA, complete cds.
GenBankBT0007300.0BT000730.1 Arabidopsis thaliana clone RAFL09-58-M22 (R18947) putative NAM (no apical meristem) protein (At1g34190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461247.10.0PREDICTED: NAC domain-containing protein 16-like
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLR0IRU70.0R0IRU7_9BRAS; Uncharacterized protein
STRINGXP_010461247.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]