PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g043230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 309aa    MW: 35625 Da    PI: 7.813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g043230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5381361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yLkkk++ +k+++ evikevd++k+ePwdL+   ++ +  ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk +
  Csa14g043230.1   8 VPPGFRFHPTDEELLHYYLKKKISYEKFDM-EVIKEVDLNKIEPWDLQDrcRIGStPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCI 101
                     69****************************.99**************952433332556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   +++g++ktLvfykgrap+g+ktdW+mheyr+
  Csa14g043230.1 102 RN-CYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI 136
                     *9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-597156IPR003441NAC domain
PROSITE profilePS5100557.7668156IPR003441NAC domain
PfamPF023653.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFDMEVI KEVDLNKIEP WDLQDRCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC IRNCYKKIGM RKTLVFYKGR  120
APHGQKTDWI MHEYRIEDTD DDPSEDGWVV CRVFKKKNLF KVGNDVSSNI NNSRLEARSF  180
IRRESSYQGI SMFELNKPEE IGLHQYPQPP MFQPHQKPLS IGYDYSLALL PRESEYQQAC  240
EPSGVEVGSC KTVGEWGMVN CNMGNHEQDS SRAMTMRFED EGNNNSSTVQ PPSNLLSLRG  300
ENGFLGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-50815815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g043230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0270351e-156AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankCP0026841e-156CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461150.10.0PREDICTED: protein BEARSKIN1-like
SwissprotQ9C8780.0BRN1_ARATH; Protein BEARSKIN1
TrEMBLD7KIH40.0D7KIH4_ARALL; ANAC015
STRINGXP_010461150.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.10.0NAC domain containing protein 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]