PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 561aa    MW: 62951.4 Da    PI: 6.279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61.1e-48511761128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelvv+yLk+k+++kkl++ e+i e+d+yk++P++Lp +  +k+++++w+fFs rd+k+  g+r++rat++gyWkatgkd+ ++
  Csa14g042630.1  51 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-EAIGETDVYKFDPEELPeRaLYKTRDRQWFFFSLRDRKH--GSRSSRATERGYWKATGKDRVIK 142
                     579***************************.89**************95346677999**********86..89********************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ vg kktLvf++grap+ge+t+Wvmhey+l
  Csa14g042630.1 143 C-DSRPVGEKKTLVFHRGRAPNGERTNWVMHEYTL 176
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5542201IPR003441NAC domain
PROSITE profilePS5100552.99551201IPR003441NAC domain
PfamPF023651.8E-2653176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010224Biological Processresponse to UV-B
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:1900409Biological Processpositive regulation of cellular response to oxidative stress
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
KNDSSSFFFF HLVQKNLNFL GFFLFLFFYK FSVIGRGRDE VMDLTAENGG LAPGFRFHPT  60
DEELVVYYLK RKIRRKKLRV EAIGETDVYK FDPEELPERA LYKTRDRQWF FFSLRDRKHG  120
SRSSRATERG YWKATGKDRV IKCDSRPVGE KKTLVFHRGR APNGERTNWV MHEYTLHEEE  180
LKRCGGGDVK DAYVLYKIYK KSGSGPKNGE QYGAPFIEEE WVEEGDDVDE PVDVPGNQLI  240
VSAGVDNNNL WAKGISQSEL DDNDIEELMR QVSDQPGPTM QLNGVSGLDS HVNFEEDMYL  300
EIDDLLLPEP EPTSLEATKK NSGVLNDNDF VDADSYFRDL GATNLQSGPV SGHFGNGVEQ  360
CNTSLVTDQT NTYQFQQQTR KKQASNWPLH NSYTRQINNG SSLMQELNND RLTAVRFIEA  420
PGTGVPSEFI NPLPSSTSIT KEDEATKGES SQFASSLWTF LESVPAKPAY ASENAFVKVN  480
LVRMSSSGGL FRFASKSTGK NNNVVVTASD SAVKRKKSGG NNDKKNKNKG FFCLSIIGAL  540
CALFWVIIGT MGVSGRSLLW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-435120717171NO APICAL MERISTEM PROTEIN
1ut4_B3e-435120717171NO APICAL MERISTEM PROTEIN
1ut7_A3e-435120717171NO APICAL MERISTEM PROTEIN
1ut7_B3e-435120717171NO APICAL MERISTEM PROTEIN
3swm_A3e-435120720174NAC domain-containing protein 19
3swm_B3e-435120720174NAC domain-containing protein 19
3swm_C3e-435120720174NAC domain-containing protein 19
3swm_D3e-435120720174NAC domain-containing protein 19
3swp_A3e-435120720174NAC domain-containing protein 19
3swp_B3e-435120720174NAC domain-containing protein 19
3swp_C3e-435120720174NAC domain-containing protein 19
3swp_D3e-435120720174NAC domain-containing protein 19
4dul_A3e-435120717171NAC domain-containing protein 19
4dul_B3e-435120717171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178KIRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00176DAPTransfer from AT1G32870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461083.10.0PREDICTED: NAC domain-containing protein 13
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLR0IN970.0R0IN97_9BRAS; Uncharacterized protein
STRINGXP_010461083.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.10.0NAC domain protein 13
Publications ? help Back to Top
  1. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  2. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]